Lebrilla League

Nutritional and Clinical Glycomics Research

Category: Uncategorized (Page 5 of 6)

1999 Publications

January 25, 2013 /

Cancilla, M.T., A.W. Wong, L.R. Voss, and C.B. Lebrilla, Fragmentation reactions in the mass spectrometry analysis of neutral oligosaccharides.. Anal Chem, 1999. 71(15): p. 3206-18.

Nicholas, G.M., T.W. Hong, T.F. Molinski, M.L. Lerch, M.T. Cancilla, and C.B. Lebrilla, Oceanapiside, an antifungal bis-alpha,omega-amino alcohol glycoside from the marine sponge Oceanapia phillipensis.. J Nat Prod, 1999. 62(12): p. 1678-81.

Tseng, K., J.L. Hedrick, and C.B. Lebrilla, Catalog-library approach for the rapid and sensitive structural elucidation of oligosaccharides.. Anal Chem, 1999. 71(17): p. 3747-54.

Wang, H., K. Tseng, and C.B. Lebrilla, A general method for producing bioaffinity MALDI probes., 1999. 71(10): p. 2014-20.

Wong, A.W., M.T. Cancilla, L.R. Voss, and C.B. Lebrilla, Anion dopant for oligosaccharides in matrix-assisted laser desorption ionization mass spectrometry.. Anal Chem, 1999. 71(1): p. 205-11.

2001 Publications

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Ahn, S., J. Ramirez, G. Grigorean, and C.B. Lebrilla, Chiral recognition in gas-phase cyclodextrin- amino acid complexes–is the three point interaction still valid in the gas phase? J Am Soc Mass Spectrom, 2001. 12(3): p. 278-87.

Franz, A.H., T.F. Molinski, and C.B. Lebrilla, MALDI-FTMS characterization of oligosaccharides labeled with 9-aminofluorene.. J Am Soc Mass Spectrom, 2001. 12(12): p. 1254-61.

Grigorean, G. and C.B. Lebrilla, Enantiomeric analysis of pharmaceutical compounds by ion molecule reactions.. Anal Chem, 2001. 73(8): p. 1684-91.

Lebrilla, C.B., The gas-phase chemistry of cyclodextrin inclusion complexes.. Acc Chem Res, 2001. 34(8): p. 653-61.

Liu, J., K. Tseng, B. Garcia, C.B. Lebrilla, E. Mukerjee, S. Collins, and R. Smith, Electrophoresis separation in open microchannels. A method for coupling electrophoresis with MALDI-MS.. Anal Chem, 2001. 73(9): p. 2147-51.

Tseng, K., H. Wang, C.B. Lebrilla, B. Bonnell, and J. Hedrick, Identification and structural elucidation of lectin-binding oligosaccharides by bioaffinity matrix-assisted laser desorption ionization Fourier transform mass spectrometry.. Anal Chem, 2001. 73(15): p. 3556-61.

Tseng, K., Y. Xie, J. Seeley, J.L. Hedrick, and C.B. Lebrilla, Profiling with structural elucidation of the neutral and anionic O-linked oligosaccharides in the egg jelly coat of Xenopus laevis by Fourier transform mass spectrometry.. Glycoconj J, 2001. 18(4): p. 309-20.

Xie, Y., K. Tseng, C.B. Lebrilla, and J.L. Hedrick, Targeted Use of Exoglycosidase Digestion for structural elucidation of neutral o-linked oligosacchardies. J Am Soc Mass Spectrom, 2001. 12(8): p. 877-84.

2003 Publications

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An, H.J., A.H. Franz, and C.B. Lebrilla, Improved capillary electrophoretic separation and mass spectrometric detection of oligosaccharides. J Chromatogr A, 2003. 1004(1-2): p. 121-9.

An, H.J., T.R. Peavy, J.L. Hedrick, and C.B. Lebrilla, Determination of N-Glycosylation Sites and Site Heterogeneity in Glycoproteins. Anal Chem, 2003. 75(20): p. 5628-37.

Franz, A.H., R. Liu, A. Song, K.S. Lam, and C.B. Lebrilla, High-Throughput One-Bead-One-Compound Approach to Peptide-Encoded Combinatorial Libraries- MALDI-MS Analysis of Single TentaGel Beads. J Comb Chem, 2003. 5(2): p. 125-37.

Song, A., J. Zhang, C.B. Lebrilla, and K.S. Lam, A Novel and Rapid Encoding Method Based on Mass Spec for ‘One-bead’one’compound’ small molecule combinatorial libraries. J Am Chem Soc, 2003. 125(20): p. 6180-8.

Steele, P.T., H.J. Tobias, D.P. Fergenson, M.E. Pitesky, J.M. Horn, G.A. Czerwieniec, S.C. Russell, C.B. Lebrilla, E.E. Gard, and M. Frank, Laser power dependence of mass spectral signatures from individual bacterial spores in bioaerosol mass spectrometry.. Anal Chem, 2003. 75(20): p. 5480-7.

Vrkic, A.K., R.A. O’Hair, and C.B. Lebrilla, Unusual covalent bond-breaking reactions of beta-cyclodextrin inclusion complexes of nucleobases/nucleosides and related guest molecules. Eur J Mass Spectrom (Chichester, Eng), 2003. 9(6): p. 563-77.

Xie, Y. and C.B. Lebrilla, Infrared Multiphoton Dissociation of Alkali Metal-coordinated oligos. Anal Chem, 2003. 75(7): p. 1590-8.

Xie, Y., K.M. Schubothe, and C.B. Lebrilla, Infrared Laser Isolation of Ions in Fourier Transform Mass Spectrometry. Anal Chem, 2003. 75(1): p. 160-4.

2004 Publications

January 25, 2013 /

Fergenson, D.P., M.E. Pitesky, H.J. Tobias, P.T. Steele, G.A. Czerwieniec, S.C. Russell, C.B. Lebrilla, J.M. Horn, K.R. Coffee, A. Srivastava, S.P. Pillai, M.T. Shih, H.L. Hall, A.J. Ramponi, J.T. Chang, R.G. Langlois, P.L. Estacio, R.T. Hadley, M. Frank, and E.E. Gard, Reagentless detection and classification of individual bioaerosol particles in seconds.. Anal Chem, 2004. 76(2): p. 373-8.

Hwang, S.H., A. Lehman, X. Cong, M.M. Olmstead, K.S. Lam, C.B. Lebrilla, and M.J. Kurth, OBOC small-molecule combinatorial library encoded by halogenated mass-tags.. Org Lett, 2004. 6(21): p. 3829-32.

Song, A., X. Wang, J. Zhang, J. Marik, C.B. Lebrilla, and K.S. Lam, Synthesis of hydrophilic and flexible linkers for peptide derivatization in solid phase.. Bioorg Med Chem Lett, 2004. 14(1): p. 161-5.

Song, A., J. Zhang, C.B. Lebrilla, and K.S. Lam, Solid-Phase Synthesis and Spectral Properties of 2-Alkylthio-6H-pyrano[2,3-f]benzimidazole-6-ones A Combinatorial Approach for 2-Alkylthioimidazocoumarins. J Comb Chem, 2004. 6(4): p. 604-10.

Wang, X., J. Zhang, A. Song, C.B. Lebrilla, and K.S. Lam, Encoding Method for OBOC Small Molecule Libraries Using a biphasic approcach for ladder-synthesis of coding tags. J Am Chem Soc, 2004. 126(18): p. 5740-9.

Xie, Y., J. Liu, J. Zhang, J.L. Hedrick, and C.B. Lebrilla, Method for the Comparative Glycomic Analyses of o-linked, mucin-type oligos. Anal Chem, 2004. 76(17): p. 5186-97.

Zhang, J., L.L. Lindsay, J.L. Hedrick, and C.B. Lebrilla, Strategy for profiling and structure elucidation of mucin-type oligosaccharides by mass spectrometry.. Anal Chem, 2004. 76(20): p. 5990-6001.

Zhang, J., Y. Xie, J.L. Hedrick, and C.B. Lebrilla, Profiling the morphological distribution of O-linked oligosaccharides. Anal Biochem, 2004. 334(1): p. 20-35.

2005 Publications

January 25, 2013 /

Ahn, S., X. Cong, C.B. Lebrilla, and S. Gronert, Zwitterion formation in gas-phase cyclodextrin complexes. J Am Soc Mass Spectrom, 2005. 16(2): p. 166-75.

An, H.J., S. Lurie, L.C. Greve, D. Rosenquist, C. Kirmiz, J.M. Labavitch, and C.B. Lebrilla, Determination of pathogen-related enzyme action by mass spectrometry analysis of pectin breakdown products of plant cell walls.. Anal Biochem, 2005. 338(1): p. 71-82.

An, H.J., M. Ninonuevo, J. Aguilan, H. Liu, C.B. Lebrilla, L.S. Alvarenga, and M.J. Mannis, Glycomics Analyses of Tear Fluid for the Diagnostic Detection of Ocular Rosacea. J Proteome Res, 2005. 4(6): p. 1981-7.

Czerwieniec, G.A., S.C. Russell, C.B. Lebrilla, K.R. Coffee, V. Riot, P.T. Steele, M. Frank, and E.E. Gard, Improved sensitivity and mass range in time-of-flight bioaerosol mass spectrometry using an electrostatic ion guide.. J Am Soc Mass Spectrom, 2005. 16(11): p. 1866-75.

Czerwieniec, G.A., S.C. Russell, H.J. Tobias, M.E. Pitesky, D.P. Fergenson, P. Steele, A. Srivastava, J.M. Horn, M. Frank, E.E. Gard, and C.B. Lebrilla, Stable isotope labeling of entire Bacillus atrophaeus spores and vegetative cells using bioaerosol mass spectrometry.. Anal Chem, 2005. 77(4): p. 1081-7.

Park, Y. and C.B. Lebrilla, Application of Fourier transform ion cyclotron resonance mass spectrometry to oligosaccharides.. Mass Spectrom Rev, 2005. 24(2): p. 232-64.

Srivastava, A., M.E. Pitesky, P.T. Steele, H.J. Tobias, D.P. Fergenson, J.M. Horn, S.C. Russell, G.A. Czerwieniec, C.B. Lebrilla, E.E. Gard, and M. Frank, Comprehensive assignment of mass spectral signatures from individual Bacillus atrophaeus spores in matrix-free laser desorption ionization bioaerosol mass spectrometry. Anal Chem, 2005. 77(10): p. 3315-23.

Ying, L., R. Liu, J. Zhang, K. Lam, C.B. Lebrilla, and J. Gervay-Hague, A topologically segregated one-bead-one-compound combinatorial glycopeptide library for identification of lectin ligands.. J Comb Chem, 2005. 7(3): p. 372-84.

Zhang, J., L. Lamotte, E.D. Dodds, and C.B. Lebrilla, Atmospheric pressure MALDI Fourier transform mass spectrometry of labile oligosaccharides.. Anal Chem, 2005. 77(14): p. 4429-38.

Zhang, J., K. Schubothe, B. Li, S. Russell, and C.B. Lebrilla, Infrared multiphoton dissociation of O-linked mucin-type oligosaccharides. Anal Chem, 2005. 77(1): p. 208-14.

2006 Publications

January 25, 2013 /

Aguilan, J.T., F.M. Dayrit, J. Zhang, M.R. Ninonuevo, and C.B. Lebrilla, Structural analysis of kappa-carrageenan [corrected] sulfated oligosaccharides by positive mode nano-ESI-FTICR-MS and MS-MS by SORI-CID. J Am Soc Mass Spectrom, 2006. 17(1): p. 96-103.

An, H.J., S. Miyamoto, K.S. Lancaster, C. Kirmiz, B. Li, K.S. Lam, G.S. Leiserowitz, and C.B. Lebrilla, Profiling of Glycans in Serum for the Discovery of Potential biomarkers for ovarian cancer. J Proteome Res, 2006. 5(7): p. 1626-35.

An, H.J., J.S. Tillinghast, D.L. Woodruff, D.M. Rocke, and C.B. Lebrilla,A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins.. J Proteome Res, 2006. 5(10): p. 2800-8.

Barber, S.M., P.J. Costanzo, N.W. Moore, T.E. Patten, K.S. Lancaster, C.B. Lebrilla, and T.L. Kuhl, Bilateral, difunctional nanosphere aggregates and their assembly mediated by polymer chains. J Phys Chem A, 2006. 110(13): p. 4538-42.

Cong, X., G. Czerwieniec, E. McJimpsey, S. Ahn, F.A. Troy, and C.B. Lebrilla, Structural relationships in small molecule interactions governing gas-phase enantioselectivity and zwitterionic formation.. J Am Soc Mass Spectrom, 2006. 17(3): p. 442-52.

Dodds, E.D., H.J. An, P.J. Hagerman, and C.B. Lebrilla, Enhanced peptide mass fingerprinting through high mass accuracy- Exclusion of non-peptide signals based on residual mass.. J Proteome Res, 2006. 5(5): p. 1195-203.

Dodds, E.D., P.J. Hagerman, and C.B. Lebrilla, Fragmentation of singly protonated peptides via a combination of infrared and collisional activation.. Anal Chem, 2006. 78(24): p. 8506-11.

Goldberg, D., M. Bern, B. Li, and C.B. Lebrilla, Automatic determination of O-glycan structure from fragmentation spectra.. J Proteome Res, 2006. 5(6): p. 1429-34.

Iwahashi, C.K., D.H. Yasui, H.J. An, C.M. Greco, F. Tassone, K. Nannen, B. Babineau, C.B. Lebrilla, R.J. Hagerman, and P.J. Hagerman, Protein composition of the intranuclear inclusions of FXTAS.. Brain, 2006. 129(Pt 1): p. 256-71.

Lancaster, K.S., H.J. An, B. Li, and C.B. Lebrilla, Interrogation of N-Linked Oligosaccharides Using infrared multiphoton dissociation in FT-ICR Mass Spec. Anal Chem, 2006. 78(14): p. 4990-7.

Lee, S., N.L. Young, P.A. Whetstone, S.M. Cheal, W.H. Benner, C.B. Lebrilla, and C.F. Meares, Method to site-specifically identify and quantitate carbonyl end products of protein oxidation using oxidation-dependent element coded affinity tags O-ECAT and nanoliquid chromatography…. J Proteome Res, 2006. 5(3): p. 539-47.

Ninonuevo, M.R., Y. Park, H. Yin, J. Zhang, R.E. Ward, B.H. Clowers, J.B. German, S.L. Freeman, K. Killeen, R. Grimm, and C.B. Lebrilla, A strategy for annotating the human milk glycome. J Agric Food Chem, 2006. 54(20): p. 7471-80.

Ward, R.E., M. Ninonuevo, D.A. Mills, C.B. Lebrilla, and J.B. German, In vitro fermentation of breast milk oligosaccharides by Bifidobacterium infantis and Lactobacillus gasseri.. Appl Environ Microbiol, 2006. 72(6): p. 4497-9.

2007 Publications

January 25, 2013 /

Clowers, B.H., E.D. Dodds, R.R. Seipert, and C.B. Lebrilla, Site determination of protein glycosylation based on digestion with immobilized nonspecific proteases and Fourier transform ion cyclotron resonance mass spectrometry. J Proteome Res, 2007. 6(10): p. 4032-40.

Cooke, C.L., H.J. An, J. Kim, J.V. Solnick, and C.B. Lebrilla, Method for profiling mucin oligosaccharides from gastric biopsies of rhesus monkeys with and without Helicobacter pylori infection. Anal Chem, 2007. 79(21): p. 8090-7.

Dodds, E.D., J.B. German, and C.B. Lebrilla, Enabling MALDI-FTICR-MSMS for high-performance proteomics through combination of infrared and collisional activation. Anal Chem, 2007. 79(24): p. 9547-56.

Kirmiz, C., B. Li, H.J. An, B.H. Clowers, H.K. Chew, K.S. Lam, A. Ferrige, R. Alecio, A.D. Borowsky, S. Sulaimon, C.B. Lebrilla, and S. Miyamoto,A Serum Glycomics Approach to Breast Cancer Biomarkers. Mol Cell Proteomics, 2007. 6(1): p. 43-55.

LoCascio, R.G., M.R. Ninonuevo, S.L. Freeman, D.A. Sela, R. Grimm, C.B. Lebrilla, D.A. Mills, and J.B. German, Glycoprofiling of bifidobacterial consumption of human milk oligosaccharides demonstrates strain specific, preferential consumption of small chain glycans secreted in early human lactation. J Agric Food Chem, 2007. 55(22): p. 8914-9.

Ninonuevo, M.R., R.E. Ward, R.G. LoCascio, J.B. German, S.L. Freeman, M. Barboza, D.A. Mills, and C.B. Lebrilla, Methods for the quantitation of human milk oligosaccharides in bacterial fermentation by mass spectrometry. Anal Biochem, 2007. 361(1): p. 15-23.

Ward, R.E., M. Ninonuevo, D.A. Mills, C.B. Lebrilla, and J.B. German, In vitro fermentability of human milk oligosaccharides by several strains of bifidobacteria Mol Nutr Food Res, 2007. 51(11): p. 1398-405.

Ye, J., H. Liu, C. Kirmiz, C.B. Lebrilla, and D.M. Rocke, On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve. BMC Bioinformatics, 2007. 8: p. 477.

Young, N.L., M.C. Sisto, M.N. Young, P.G. Grant, D.W. Killilea, L. LaMotte, K.J. Wu, and C.B. Lebrilla, Steady-state asymmetric nanospray dual ion source for accurate mass determination within a chromatographic separation. Anal Chem, 2007. 79(15): p. 5711-8.

2008 Publications

January 25, 2013 /

Argov, N., S. Wachsmann-Hogiu, S.L. Freeman, T. Huser, C.B. Lebrilla, and J.B. German, Size-dependent lipid content in human milk fat globules.. J Agric Food Chem, 2008. 56(16): p. 7446-50.

Clowers, B.H., E.D. Dodds, R.R. Seipert, and C.B. Lebrilla, Dual polarity accurate mass calibration for electrospray ionization and matrix-assisted laser desorption ionization mass spec using maltooligosaccharides Anal Biochem, 2008. 381(2): p. 205-13.

Dodds, E.D., B.H. Clowers, P.J. Hagerman, and C.B. Lebrilla, Systematic characterization of high mass accuracy influence on false discovery and probability scoring in peptide mass fingerprinting, 2008. 372(2): p. 156-66.

German, J.B., S.L. Freeman, C.B. Lebrilla, and D.A. Mills, Human milk oligosaccharides- evolution, structures and bioselectivity as substrates for intestinal bacteria. Nestle Nutr Workshop Ser Pediatr Program, 2008. 62: p. 205-18; discussion 218-22.

Li, B., H.J. An, C. Kirmiz, C.B. Lebrilla, K.S. Lam, and S. Miyamoto, Glycoproteomic analyses of ovarian cancer cell lines and sera from ovarian cancer patients show distinct glycosylation changes in individual proteins. J Proteome Res, 2008. 7(9): p. 3776-88.

McJimpsey, E.L., W.M. Jackson, C.B. Lebrilla, H. Tobias, M.J. Bogan, E.E. Gard, M. Frank, and P.T. Steele, Parameters contributing to efficient ion generation in aerosol MALDI mass spectrometry. J Am Soc Mass Spectrom, 2008. 19(3): p. 315-24.

Ninonuevo, M.R., P.D. Perkins, J. Francis, L.M. Lamotte, R.G. LoCascio, S.L. Freeman, D.A. Mills, J.B. German, R. Grimm, and C.B. Lebrilla, Daily variations in oligosaccharides of human milk determined by microfluidic chips and mass spectrometry.. J Agric Food Chem, 2008. 56(2): p. 618-26.

Packer, N.H., C.W. von der Lieth, K.F. Aoki-Kinoshita, C.B. Lebrilla, J.C. Paulson, R. Raman, P. Rudd, R. Sasisekharan, N. Taniguchi, and W.S. York, Frontiers in glycomics- bioinformatics and biomarkers in disease. An NIH white paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD, (September 11-13, 2006). Proteomics, 2008. 8(1): p. 8-20.

Seipert, R.R., M. Barboza, M.R. Ninonuevo, R.G. LoCascio, D.A. Mills, S.L. Freeman, J.B. German, and C.B. Lebrilla, Analysis and quantitation of fructooligosaccharides using matrix-assisted laser desorption ionization Fourier transform ion cyclotron resonance mass spectrometry.. Anal Chem, 2008. 80(1): p. 159-65.

Seipert, R.R., E.D. Dodds, B.H. Clowers, S.M. Beecroft, J.B. German, and C.B. Lebrilla, Factors that influence fragmentation behavior of N-linked glycopeptide ions. Anal Chem, 2008. 80(10): p. 3684-92.

Sela, D.A., J. Chapman, A. Adeuya, J.H. Kim, F. Chen, T.R. Whitehead, A. Lapidus, D.S. Rokhsar, C.B. Lebrilla, J.B. German, N.P. Price, P.M. Richardson, and D.A. Mills, The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome.. Proc Natl Acad Sci U S A, 2008. 105(48): p. 18964-9.

Tao, N., E.J. DePeters, S. Freeman, J.B. German, R. Grimm, and C.B. Lebrilla, Bovine milk glycome.. J Dairy Sci, 2008. 91(10): p. 3768-78.

Williams, T.I., D.A. Saggese, K.L. Toups, J.L. Frahm, H.J. An, B. Li, C.B. Lebrilla, and D.C. Muddiman, Investigations with O-linked protein glycosylations by matrix-assisted laser desorption-ionization Fourier transform ion cyclotron resonance mass spectrometry. J Mass Spectrom, 2008. 43(9): p. 1215-23.

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